subroutines,
121 total:

ADVANCE_MU_T  1
ADVANCE_UV  1
ADVANCE_W  1
ADVECT_SCALAR  4,2
ADVECT_U  2,2
ADVECT_V  2,2
ADVECT_W  2,2
BOUND_TKE  1
CALCULATE_FULL  1
CALCULATE_KHH  
CALCULATE_KHV  
CALCULATE_KM_KH  1,7
CALCULATE_N2  1
CALCULATE_PHY_TEND  1
CALC_ALT  1
CALC_COEF_W  1
CALC_CQ  1
CALC_JET_SOUNDING  1
CALC_MU_UV  3
CALC_PHP  1
CALC_P_RHO  2
CALC_P_RHO_PHI  2
CALC_WW  
CALC_WW_CP  1
CAL_DAMPKM  1
CAL_DEFORM_AND_DIV  1
CAL_TITAU_11_22_33  6
CAL_TITAU_12_21  3
CAL_TITAU_13_31  4
CAL_TITAU_23_32  4
COMPUTE_DIFF_METRICS  1
CONST_MODULE_INITIALIZE  2
CORIOLIS  1
COUPLE  38,2
COUPLE_OR_UNCOUPLE_EM  8,8
CURVATURE  1
DECOUPLE  
DIAGNOSE_W  2
DUMMY_INTERP_EM  
DUMP_DATA  
GET_SOUNDING  13,6
HORIZONTAL_DIFFUSION  8
HORIZONTAL_DIFFUSION_2  1,7
HORIZONTAL_DIFFUSION_3DMP  2
HORIZONTAL_DIFFUSION_S  4
HORIZONTAL_DIFFUSION_U_2  1,2
HORIZONTAL_DIFFUSION_V_2  1,2
HORIZONTAL_DIFFUSION_W_2  1,2
HORIZONTAL_PRESSURE_GRADIENT  1
INIT_DOMAIN  4,21
INIT_DOMAIN_RK  7,143
INIT_MODULES_EM  1,2
INIT_MODULE_BIG_STEP  1
INIT_MODULE_INITIALIZE  ,8
INIT_MODULE_SMALL_STEP  
INIT_ZERO_TENDENCY  1,8
INTERP_DOMAIN_EM_PART1  4,12
INTERP_DOMAIN_EM_PART2  1,5
ISOTROPIC_KM  1
MASS_FLUX_DIVERGENCE  
MIX_QV  
MOIST_PHYSICS_FINISH_EM  1
MOIST_PHYSICS_PREP_EM  1
PARRAY  6
PG_BUOY_W  1
PHY_BC  1,15
PHY_PREP  1
POSITIVE_DEFINITE_FILTER  
READ_INPUT_JET  2
READ_MM5  ,11
READ_SI  ,45
READ_SOUNDING  5
REBALANCE  1,1
REBALANCE_DRIVER  1,1
RELAX_BDY_DRY  1,6
RELAX_BDY_SCALAR  6,1
RHS_PH  2
RK_ADDTEND_DRY  1
RK_PHYS_BC_DRY_1  1,10
RK_PHYS_BC_DRY_2  1,6
RK_SCALAR_TEND  3,9
RK_STEP_PREP  1,9
RK_TENDENCY  1,39
RK_UPDATE_SCALAR  3
SET_PHYS_BC_DRY_1  ,14
SET_PHYS_BC_DRY_2  1,12
SET_PHYS_BC_SMALLSTEP_1  ,4
SET_W_SURFACE  2
SMAG2D_KM  1
SMAG_KM  1
SMALL_STEP_FINISH  1
SMALL_STEP_PREP  1
SOLVE_EM  1,134
SPEC_BDYUPDATE_PH  1
SPEC_BDY_DRY  1,6
SPEC_BDY_SCALAR  6,1
START_DOMAIN_EM  1,51
SUMFLUX  1
SYMM_CHECK  
TIME_FILTER  1
TKE_BUOYANCY  1
TKE_DISSIP  1
TKE_KM  1
TKE_RHS  1,3
TKE_SHEAR  1,8
VAR1_MIN_MAX  
VAR_MIN_MAX  
VAR_PRINT  
VERTICAL_DIFFUSION  4
VERTICAL_DIFFUSION_2  1,7
VERTICAL_DIFFUSION_3DMP  2
VERTICAL_DIFFUSION_MP  2
VERTICAL_DIFFUSION_S  4
VERTICAL_DIFFUSION_S_QV  
VERTICAL_DIFFUSION_U  2
VERTICAL_DIFFUSION_U_2  1,1
VERTICAL_DIFFUSION_V  2
VERTICAL_DIFFUSION_V_2  1,1
VERTICAL_DIFFUSION_W_2  1,1
W_DAMP  1
ZERO_TEND  17

functions,
2 total:

EM_CD_FEEDBACK_MASK  
INTERP_0  57

modules,
10 total:

MODULE_ADVECT_EM  1
MODULE_BC_EM  2
MODULE_BIG_STEP_UTILITIES_EM  6
MODULE_DIFFUSION_EM  1
MODULE_EM  1
MODULE_INITIALIZE  6
MODULE_INIT_UTILITIES  6
MODULE_SI_IO_EM  2
MODULE_SMALL_STEP_EM  1
MODULE_SOLVEDEBUG_EM  1