1,add three more namelist variables:

diff -r WRFDA/Registry/Registry.wrfvar WRFDA_20090820/Registry/Registry.wrfvar

< rconfig   logical   calc_ph_increment       namelist,wrfvar2  1  .false.  -  "calc_ph_increment"       ""  ""

< rconfig   logical   calc_p_increment        namelist,wrfvar2  1  .true.   -  "calc_p_increment"        ""  ""

< rconfig   logical   gpsref_thinning         namelist,wrfvar5  1  .false.  -  "gpsref_thinning"         ""  ""

2, increase the dimension from 6 to 60 (outer-loops)for var and len scalings

3, for mpp compliling in NCAR/bluefire

diff -r WRFDA/external/RSL_LITE/gen_comms.c WRFDA_20090820/external/RSL_LITE/gen_comms.c

4, for compiling da_verif_grid and verif_grid

diff -r WRFDA/var/build/da.make WRFDA_20090820/var/build/da.make
Only in WRFDA/var/da: da_verif_grid
Only in WRFDA/var/graphics/ncl: verif_grid_time_average.ncl
Only in WRFDA/var/graphics/ncl: verif_grid_time_series.ncl
Only in WRFDA/var/graphics/ncl: verif_grid_vert_profile.ncl
Only in WRFDA/var/scripts: da_verif_grid.ksh

5, gpspw, gpsztd single ob tests for multiple outer-loops

diff -r WRFDA/var/da/da_gpspw/da_get_innov_vector_gpspw.inc WRFDA_20090820/var/da/da_gpspw/da_get_innov_vector_gpspw.inc

diff -r WRFDA/var/da/da_gpspw/da_get_innov_vector_gpsztd.inc WRFDA_20090820/var/da/da_gpspw/da_get_innov_vector_gpsztd.inc

6, add Shu-Ya Chen's developments (QC, thining) to gpsref, and prepare

latitude-wise, height-wise innovations

diff -r WRFDA/var/da/da_gpsref/da_get_innov_vector_gpsref.inc WRFDA_20090820/var/da/da_gpsref/da_get_innov_vector_gpsref.inc

diff -r WRFDA/var/da/da_gpsref/da_gpsref.f90 WRFDA_20090820/var/da/da_gpsref/da_gpsref.f90

diff -r WRFDA/var/da/da_gpsref/da_residual_gpsref.inc WRFDA_20090820/var/da/da_gpsref/da_residual_gpsref.inc

7, keep the correct base state parameters and time in wrfvar_output file

diff -r WRFDA/var/da/da_main/da_solve.inc WRFDA_20090820/var/da/da_main/da_solve.inc

diff -r WRFDA/var/da/da_main/da_wrfvar_init2.inc WRFDA_20090820/var/da/da_main/da_wrfvar_init2.inc

8, mods for gpsref single ob test and pseudo tests with multiple outer-loops

diff -r WRFDA/var/da/da_minimisation/da_get_innov_vector.inc WRFDA_20090820/var/da/da_minimisation/da_get_innov_vector.inc

diff -r WRFDA/var/da/da_pseudo/da_ao_stats_pseudo.inc WRFDA_20090820/var/da/da_pseudo/da_ao_stats_pseudo.inc

diff -r WRFDA/var/da/da_pseudo/da_get_innov_vector_pseudo.inc WRFDA_20090820/var/da/da_pseudo/da_get_innov_vector_pseudo.inc

9, Write the correct information for gpspw

diff -r WRFDA/var/da/da_obs_io/da_write_obs.inc WRFDA_20090820/var/da/da_obs_io/da_write_obs.inc

10, Keep the PB, U10, V10, T2, and Q2, and skip over PH ,P update

diff -r WRFDA/var/da/da_transfer_model/da_transfer_model.f90 WRFDA_20090820/var/da/da_transfer_model/da_transfer_model.f90

diff -r WRFDA/var/da/da_transfer_model/da_transfer_wrftoxb.inc WRFDA_20090820/var/da/da_transfer_model/da_transfer_wrftoxb.inc

diff -r WRFDA/var/da/da_transfer_model/da_transfer_xatowrf.inc WRFDA_20090820/var/da/da_transfer_model/da_transfer_xatowrf.inc

Only in WRFDA/var/run: gpsref_info

11, minor corrections for MAP_plot

diff -r WRFDA/var/obsproc/MAP_plot/Dir_map/plstn1.F WRFDA_20090820/var/obsproc/MAP_plot/Dir_map/plstn1.F

diff -r WRFDA/var/obsproc/MAP_plot/Dir_map/setup.F WRFDA_20090820/var/obsproc/MAP_plot/Dir_map/setup.F